ABSTRACT
As a typical food safety industrial model strain, Bacillus subtilis has been widely used in the field of metabolic engineering due to its non-pathogenicity, strong ability of extracellular protein secretion and no obvious codon preference. In recent years, with the rapid development of molecular biology and genetic engineering technology, a variety of research strategies and tools have been used to construct B. subtilis chassis cells for efficient synthesis of biological products. This review introduces the research progress of B. subtilis from the aspects of promoter engineering, gene editing, genetic circuit, cofactor engineering and pathway enzyme assembly. Then, we also summarized the application of B. subtilis in the production of biological products. Finally, the future research directions of B. subtilis are prospected.
Subject(s)
Bacillus subtilis/genetics , Bacterial Proteins/genetics , Gene Editing , Metabolic Engineering , Promoter Regions, GeneticABSTRACT
As the demand for high-performance computing continues to grow, traditional computing models are facing unprecedented challenges. Among the many emerging computing technologies, DNA computing has attracted much attention due to its low energy consumption and parallelism. The DNA circuit, which is the basis for DNA computing, is an important technology for the regulation and processing of the molecular information. This review highlights the basic principles of DNA computing, summarizes the latest research progress, and concludes with a discussion of the challenges of DNA computing. Such integrated molecular computing systems are expected to be widely used in the fields of aerospace, information security and defense system.
Subject(s)
DNA/geneticsABSTRACT
Objective To compare the regulation effects of different activated and inhibitory riboswitches , and to facilitate the precise regulation of gene circuits .Methods A green fluorescent protein amcyan expression vector regulated by different riboswitches (addA, M6, TPP and btuB) was constructed, and the expression level of amcyan under different ligand concentrations was analyzed by RT-qPCR and relative fluorescence intensity , and then compared with the expression level of a vector without any riboswitch .The dynamic control performance was analyzed .Results Under the control of addA and M6 activated riboswitches , the expression of green fluorescent protein increased with ligand concentrations , and addA riboswitch had more dynamic regulatory effect than M 6 riboswitch.However, under the control of TPP and btuB inhibitory riboswitches , the expression of green fluorescence decreased with the increase in ligand concentrations , and the dynamic regulation of btuB riboswitch was slightly greater than that of TPP riboswitch .Conclusion The regulation efficacy of different riboswitches which have the same mechanism varies .Activated riboswitch addA and inhibitory riboswitch btuB with dynamic regulation and control advantages are more suitable for precise metabolism regulation and target gene expression in Escherichia coli.
ABSTRACT
Promoters, terminators, riboswitches and ribosome-related sequences are involved in gene expression regulation at transcription and translation levels to achieve precise expression of the target gene .As regulatory elements of genes, they are widely used in the construction of gene circuits and play important roles in genome engineering and metabolic engineering.This paper not only summarized the structural characteristics of the common gene regulatory elements, the mechanism of action and modification , but expounded the function of natural and artificial gene regulatory elements in the optimization of metabolic pathways , and the future construction of gene circuits and applications .
ABSTRACT
Promoters, terminators, riboswitches and ribosome-related sequences are involved in gene expression regulation at transcription and translation levels to achieve precise expression of the target gene .As regulatory elements of genes, they are widely used in the construction of gene circuits and play important roles in genome engineering and metabolic engineering.This paper not only summarized the structural characteristics of the common gene regulatory elements, the mechanism of action and modification , but expounded the function of natural and artificial gene regulatory elements in the optimization of metabolic pathways , and the future construction of gene circuits and applications .
ABSTRACT
As the scale of synthetic gene circuits grows with sophisticated functions, rational design appears to be a bottleneck to develop synthetic biological systems. In this review, we summarized the impact of gene expression noise and competition effect on the performance of synthetic gene circuits. We also summarized recent progresses on rational design approaches, such as digital-analog circuits, network topologies design, and information-theory-based optimization approaches. Finally, we discussed future directions for rational design of synthetic gene circuits.
ABSTRACT
Synthetic biology aims to establish a complete set of engineering principles, theories, and methods, via the rational design and assembly of basic biological parts, for the goal of effective implementation of complex biological systems with programmable functions. In recent years, with emerging novel classes of programmable genetic parts, in particular, the establishment and optimization of CRISPR and CRISPRi technology platforms, synthetic biology is entering a new era. This review summarizes recent advances on CRISPR genome editing and gene regulation technologies, their applications in constructing programmable biological parts, and their roles in building sophisticated gene circuits. We also provide a future vision on how synthetic biology can transform medicine (named medical synthetic biology, MSB) and therapeutics.